Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 92:295c2597a475

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"planemo upload"
author kkonganti
date Tue, 19 Jul 2022 10:07:24 -0400
parents 046e57368d3b
children ca861be31596
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91:046e57368d3b 92:295c2597a475
29 #end if 29 #end if
30 ln -sf '$pair.forward' './cpipes-input/$read_R1'; 30 ln -sf '$pair.forward' './cpipes-input/$read_R1';
31 ln -sf '$pair.reverse' './cpipes-input/$read_R2'; 31 ln -sf '$pair.reverse' './cpipes-input/$read_R2';
32 #end for 32 #end for
33 #end if 33 #end if
34 $__tool_directory__/0.2.1/cpipes 34 $__tool_directory__/0.3.0/cpipes
35 --pipeline $input_read_type_cond.pipeline_cond.pipeline 35 --pipeline $input_read_type_cond.pipeline_cond.pipeline
36 #if ($input_read_type_cond.pipeline_cond.pipeline == "centriflaken"): 36 #if ($input_read_type_cond.pipeline_cond.pipeline == "centriflaken"):
37 --fq_single_end true 37 --fq_single_end true
38 --flye_genome_size '${genome_size}' 38 --flye_genome_size '${genome_size}'
39 #if ($input_read_type_cond.pipeline_cond.long_read_platform == "nanopore_corr"): 39 #if ($input_read_type_cond.pipeline_cond.long_read_platform == "nanopore_corr"):