Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 28:2c14fd47396e

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"planemo upload"
author kkonganti
date Wed, 29 Jun 2022 13:41:05 -0400
parents ec561fc0e030
children 4c1add46ef6e
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27:ec561fc0e030 28:2c14fd47396e
51 help="centriflaken: for long reads (Nanopore or PacBio). centriflaken_hy: for short reads (paired or unpaired). Default: centriflaken"> 51 help="centriflaken: for long reads (Nanopore or PacBio). centriflaken_hy: for short reads (paired or unpaired). Default: centriflaken">
52 <option value="centriflaken">centriflaken</option> 52 <option value="centriflaken">centriflaken</option>
53 <option value="centriflaken_hy">centriflaken_hy</option> 53 <option value="centriflaken_hy">centriflaken_hy</option>
54 </param> 54 </param>
55 <param name="read_lib_layout" type="select" label="Short Read Library Layout" value="single" 55 <param name="read_lib_layout" type="select" label="Short Read Library Layout" value="single"
56 help="If the pipeline is centriflaken_hy (i.e for short reads), what is the library layout? Default: Single-End"> 56 help="Leave this option as Single-End for centriflaken. If the pipeline is centriflaken_hy (i.e for short reads), what is the library layout? Default: Single-End">
57 <option value="single">Single-End</option> 57 <option value="single">Single-End</option>
58 <option value="paired">Paired-End</option> 58 <option value="paired">Paired-End</option>
59 </param> 59 </param>
60 <param name="long_read_platform" type="select" label="Mention long read sequencing platform and type" value="nanopore_raw" 60 <param name="long_read_platform" type="select" label="Mention long read sequencing platform and type" value="nanopore_raw"
61 help="THIS OPTION IS IGNORED IF THE INPUT READS ARE SHORT READS."> 61 help="THIS OPTION IS IGNORED IF THE INPUT READS ARE SHORT READS.">