comparison cfsan_centriflaken.xml @ 30:2c910ebd043e

"planemo upload"
author kkonganti
date Wed, 29 Jun 2022 14:40:34 -0400
parents 4c1add46ef6e
children b928b20149a9
comparison
equal deleted inserted replaced
29:4c1add46ef6e 30:2c910ebd043e
16 #if ($pipeline == "centriflaken"): 16 #if ($pipeline == "centriflaken"):
17 --fq_single_end true 17 --fq_single_end true
18 #elif ($pipeline == "centriflaken_hy"): 18 #elif ($pipeline == "centriflaken_hy"):
19 #if ($reads_lib_layout == "single"): 19 #if ($reads_lib_layout == "single"):
20 --fq_single_end true 20 --fq_single_end true
21 #else: 21 #elif ($reads_lib_layout == "paired"):
22 --fq_single_end false 22 --fq_single_end false
23 #end if 23 #end if
24 #end if 24 #end if
25 --input \${pwd_path}/cpipes-input 25 --input \${pwd_path}/cpipes-input
26 --output \${pwd_path}/cpipes-output 26 --output \${pwd_path}/cpipes-output