Mercurial > repos > kkonganti > cfsan_centriflaken
comparison cfsan_centriflaken.xml @ 30:2c910ebd043e
"planemo upload"
author | kkonganti |
---|---|
date | Wed, 29 Jun 2022 14:40:34 -0400 |
parents | 4c1add46ef6e |
children | b928b20149a9 |
comparison
equal
deleted
inserted
replaced
29:4c1add46ef6e | 30:2c910ebd043e |
---|---|
16 #if ($pipeline == "centriflaken"): | 16 #if ($pipeline == "centriflaken"): |
17 --fq_single_end true | 17 --fq_single_end true |
18 #elif ($pipeline == "centriflaken_hy"): | 18 #elif ($pipeline == "centriflaken_hy"): |
19 #if ($reads_lib_layout == "single"): | 19 #if ($reads_lib_layout == "single"): |
20 --fq_single_end true | 20 --fq_single_end true |
21 #else: | 21 #elif ($reads_lib_layout == "paired"): |
22 --fq_single_end false | 22 --fq_single_end false |
23 #end if | 23 #end if |
24 #end if | 24 #end if |
25 --input \${pwd_path}/cpipes-input | 25 --input \${pwd_path}/cpipes-input |
26 --output \${pwd_path}/cpipes-output | 26 --output \${pwd_path}/cpipes-output |