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comparison 0.2.1/readme/centriflaken_hy.md @ 47:30191f39a957

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"planemo upload"
author kkonganti
date Mon, 11 Jul 2022 12:19:48 -0400
parents 77494b0fa3c7
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46:0dd0ebe5cddf 47:30191f39a957
13 `centriflaken_hy` is a variant of the original `centriflaken` pipeline but for Illumina short reads either single-end or paired-end. 13 `centriflaken_hy` is a variant of the original `centriflaken` pipeline but for Illumina short reads either single-end or paired-end.
14 14
15 #### Workflow Usage 15 #### Workflow Usage
16 16
17 ```bash 17 ```bash
18 module load cpipes/0.2.0 18 module load cpipes/0.2.1
19 19
20 cpipes --pipeline centriflaken_hy [options] 20 cpipes --pipeline centriflaken_hy [options]
21 ``` 21 ```
22 22
23 Example: Run the default `centriflaken_hy` pipeline with taxa of interest as *E. coli*. 23 Example: Run the default `centriflaken_hy` pipeline with taxa of interest as *E. coli*.
287 ``` 287 ```
288 288
289 ### **PRE ALPHA** 289 ### **PRE ALPHA**
290 290
291 --- 291 ---
292 This modular structure and flow is still in rapid development and may change 292 The development of the modular structure and flow is an ongoing effort and may change depending on assessment of various computational topics and other considerations.
293 depending on assessment of various computational topics and other considerations 293