Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 110:345d0a16f026

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"planemo upload"
author kkonganti
date Fri, 28 Jun 2024 09:34:56 -0400
parents 6d1ac92520b6
children b6fcae1983cb
comparison
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109:6d1ac92520b6 110:345d0a16f026
1 <tool id="cfsan_centriflaken" name="Centriflaken" version="0.4.2+galaxy1"> 1 <tool id="cfsan_centriflaken" name="Centriflaken" version="0.4.2+galaxy1">
2 <description>An automated pipeline to generate a MAG of interest (E.coli or Salmonella) and perform serotyping.</description> 2 <description>An automated pipeline to generate a MAG of interest (E.coli or Salmonella) and perform serotyping.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="24.04.2">nextflow</requirement> 4 <container type="docker">quay.io/biocontainers/nextflow:24.04.2--hdfd78af_0</container>
5 <requirement type="package">graphviz</requirement>
6 </requirements> 5 </requirements>
7 <version_command>nextflow -version</version_command> 6 <version_command>nextflow -version</version_command>
8 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
9 mkdir -p cpipes-input || exit 1; 8 mkdir -p cpipes-input || exit 1;
10 pwd_path=\$(pwd); 9 pwd_path=\$(pwd);