Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 124:45ccd0403784

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author kkonganti
date Wed, 03 Jul 2024 13:00:16 -0400
parents b9c76c256e2c
children dcd41789fb61
comparison
equal deleted inserted replaced
123:b9c76c256e2c 124:45ccd0403784
5 </requirements> 5 </requirements>
6 <version_command>nextflow -version</version_command> 6 <version_command>nextflow -version</version_command>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 time_stamp=\$(date +%Y-%m-%d-%s); 8 time_stamp=\$(date +%Y-%m-%d-%s);
9 work_dir="/galaxy/nf-work-dirs/centriflaken_work_dir-"\${time_stamp}; 9 work_dir="/galaxy/nf-work-dirs/centriflaken_work_dir-"\${time_stamp};
10 input_path="\${work_dir}/cpipes-input" 10 input_path="\${work_dir}/cpipes-input";
11 mkdir -p \$work_dir || exit 1; 11 mkdir -p \$work_dir || exit 1;
12 mkdir -p "\${input_path}" || exit 1; 12 mkdir -p "\${input_path}" || exit 1;
13 #import re 13 #import re
14 #if (str($input_read_type_cond.input_read_type) == "single_long"): 14 #if (str($input_read_type_cond.input_read_type) == "single_long"):
15 #for _, $unpaired in enumerate($input_read_type_cond.input): 15 #for _, $unpaired in enumerate($input_read_type_cond.input):