Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 15:676902feecda

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"planemo upload"
author kkonganti
date Tue, 28 Jun 2022 16:44:58 -0400
parents 32255eaace3a
children 589620eec35d
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14:32255eaace3a 15:676902feecda
59 <option value="cingularitygac">singularity</option> 59 <option value="cingularitygac">singularity</option>
60 </param> 60 </param>
61 </inputs> 61 </inputs>
62 <outputs> 62 <outputs>
63 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}"> 63 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}">
64 <discover_datasets pattern="multiqc_report.html" assign_primary_output="true" directory="cpipes-output/${pipeline}-multiqc"/> 64 <discover_datasets pattern="__designation_and_ext__" assign_primary_output="true" directory="cpipes-output/${pipeline}-multiqc"/>
65 </data> 65 </data>
66 <data name="assembled_mags" format="fasta" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}"> 66 <data name="assembled_mags" format="fasta" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}">
67 <discover_datasets pattern=".*\.assembly_filtered_contigs.fasta" visible="true" directory="cpipes-output/${pipeline}-results/kraken2_extract_contigs"/> 67 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.assembly_filtered_contigs\.(?P&lt;ext&gt;.+)" visible="true" directory="cpipes-output/${pipeline}-results/kraken2_extract_contigs"/>
68 </data> 68 </data>
69 </outputs> 69 </outputs>
70 <tests> 70 <tests>
71 <!--Test 01: long reads--> 71 <!--Test 01: long reads-->
72 <test expect_num_outputs="2"> 72 <test expect_num_outputs="2">