Mercurial > repos > kkonganti > cfsan_centriflaken
comparison 0.2.1/modules/custom/dump_software_versions/main.nf @ 0:77494b0fa3c7
"planemo upload"
| author | kkonganti |
|---|---|
| date | Mon, 27 Jun 2022 15:55:37 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:77494b0fa3c7 |
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| 1 process DUMP_SOFTWARE_VERSIONS { | |
| 2 tag "${params.pipeline} software versions" | |
| 3 label 'process_pico' | |
| 4 | |
| 5 // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container | |
| 6 module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null) | |
| 7 conda (params.enable_conda ? "conda-forge::python=3.9 conda-forge::pyyaml" : null) | |
| 8 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? | |
| 9 'https://depot.galaxyproject.org/singularity/multiqc:1.11--pyhdfd78af_0' : | |
| 10 'quay.io/biocontainers/multiqc:1.11--pyhdfd78af_0' }" | |
| 11 | |
| 12 input: | |
| 13 path versions | |
| 14 | |
| 15 output: | |
| 16 path "software_versions.yml" , emit: yml | |
| 17 path "software_versions_mqc.yml", emit: mqc_yml | |
| 18 path "versions.yml" , emit: versions | |
| 19 | |
| 20 when: | |
| 21 task.ext.when == null || task.ext.when | |
| 22 | |
| 23 script: | |
| 24 def args = task.ext.args ?: '' | |
| 25 template 'dumpsoftwareversions.py' | |
| 26 } |