Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 9:872994da252c

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"planemo upload"
author kkonganti
date Tue, 28 Jun 2022 12:37:37 -0400
parents 1e19594944c5
children 9729ef11f87a
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8:4f010d01be86 9:872994da252c
34 -resume 34 -resume
35 ]]></command> 35 ]]></command>
36 <inputs> 36 <inputs>
37 <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger" label="Input read collection" /> 37 <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger" label="Input read collection" />
38 <param name="pipeline" type="select" label="CPIPES Workflow name" value="centriflaken" 38 <param name="pipeline" type="select" label="CPIPES Workflow name" value="centriflaken"
39 help="centriflaken: for short reads (paired or unpaired). centriflaken_hy: for long reads (Nanopore or PacBio). Default: centriflaken"> 39 help="centriflaken: for long reads (Nanopore or PacBio). centriflaken_hy: for short reads (paired or unpaired). Default: centriflaken">
40 <option value="centriflaken">centriflaken</option> 40 <option value="centriflaken">centriflaken</option>
41 <option value="centriflaken_hy">centriflaken_hy</option> 41 <option value="centriflaken_hy">centriflaken_hy</option>
42 </param> 42 </param>
43 <param name="read_lib_layout" type="select" label="Short Read Library Layout" value="single" 43 <param name="read_lib_layout" type="select" label="Short Read Library Layout" value="single"
44 help="If the pipeline is centriflaken_hy (i.e for short reads), what is the library layout? Default: Single-End"> 44 help="If the pipeline is centriflaken_hy (i.e for short reads), what is the library layout? Default: Single-End">