Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 5:8ab30c459b53

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"planemo upload"
author kkonganti
date Tue, 28 Jun 2022 10:22:03 -0400
parents 34d3ef477de3
children 1e19594944c5
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4:34d3ef477de3 5:8ab30c459b53
29 --fq_filename_delim '${fq_filename_delim}' 29 --fq_filename_delim '${fq_filename_delim}'
30 --fq_filename_delim_idx $fq_filename_delim_idx 30 --fq_filename_delim_idx $fq_filename_delim_idx
31 --centrifuge_extract_bug '${centrifuge_extract_bug}' 31 --centrifuge_extract_bug '${centrifuge_extract_bug}'
32 --flye_genome_size '${genome_size}' 32 --flye_genome_size '${genome_size}'
33 -profile $runtime_profile 33 -profile $runtime_profile
34 -resume
34 ]]></command> 35 ]]></command>
35 <inputs> 36 <inputs>
36 <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger" label="Input read collection" /> 37 <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger" label="Input read collection" />
37 <param name="pipeline" type="select" label="CPIPES Workflow name" value="centriflaken" 38 <param name="pipeline" type="select" label="CPIPES Workflow name" value="centriflaken"
38 help="centriflaken: for short reads (paired or unpaired). centriflaken_hy: for long reads (Nanopore or PacBio). Default: centriflaken"> 39 help="centriflaken: for short reads (paired or unpaired). centriflaken_hy: for long reads (Nanopore or PacBio). Default: centriflaken">