Mercurial > repos > kkonganti > cfsan_centriflaken

comparison 0.3.0/readme/centriflaken.md @ 97:8d7f482c64de

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"planemo upload"
author kkonganti
date Fri, 29 Jul 2022 11:11:07 -0400
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96:ef0b422978fd 97:8d7f482c64de
13 Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli. 13 Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli.
14 14
15 #### Workflow Usage 15 #### Workflow Usage
16 16
17 ```bash 17 ```bash
18 module load cpipes/0.2.1 18 module load cpipes/0.3.0
19 19
20 cpipes --pipeline centriflaken [options] 20 cpipes --pipeline centriflaken [options]
21 ``` 21 ```
22 22
23 Example: Run the default `centriflaken` pipeline with taxa of interest as *E. coli*. 23 Example: Run the default `centriflaken` pipeline with taxa of interest as *E. coli*.