Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 32:9c06429a2ffb

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"planemo upload"
author kkonganti
date Wed, 29 Jun 2022 14:57:16 -0400
parents b928b20149a9
children 0a65e6fde7b6
comparison
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31:b928b20149a9 32:9c06429a2ffb
17 --fq_single_end true 17 --fq_single_end true
18 #elif ($pipeline == "centriflaken_hy"): 18 #elif ($pipeline == "centriflaken_hy"):
19 #if ($reads_lib_layout == "single"): 19 #if ($reads_lib_layout == "single"):
20 --fq_single_end true 20 --fq_single_end true
21 #elif ($reads_lib_layout == "paired"): 21 #elif ($reads_lib_layout == "paired"):
22 --fq_single_end false 22 --fq_single_end false --fq2_suffix '${fq2_suffix}'
23 #end if 23 #end if
24 #end if 24 #end if
25 --input \${pwd_path}/cpipes-input 25 --input \${pwd_path}/cpipes-input
26 --output \${pwd_path}/cpipes-output 26 --output \${pwd_path}/cpipes-output
27 --fq_suffix '${fq_suffix}' 27 --fq_suffix '${fq_suffix}'