Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 59:a8d6f5950fbf

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"planemo upload"
author kkonganti
date Wed, 13 Jul 2022 12:52:43 -0400
parents 2256bc31d3bf
children 5c0901d0d8a8
comparison
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58:2256bc31d3bf 59:a8d6f5950fbf
111 <option value="kondagac" selected="true">conda</option> 111 <option value="kondagac" selected="true">conda</option>
112 <option value="cingularitygac">singularity</option> 112 <option value="cingularitygac">singularity</option>
113 </param> --> 113 </param> -->
114 </inputs> 114 </inputs>
115 <outputs> 115 <outputs>
116 <data name="multiqc_report" format="html" label="${pipeline}: MultiQC Report on ${on_string}" from_work_dir="multiqc_report.html"/> 116 <data name="multiqc_report" format="html" label="${input_read_type_cond.pipeline_cond.pipeline}: MultiQC Report on ${on_string}" from_work_dir="multiqc_report.html"/>
117 <collection name="assembled_mags" type="list" label="${pipeline}: Assembled MAGs on ${on_string}"> 117 <collection name="assembled_mags" type="list" label="${input_read_type_cond.pipeline_cond.pipeline}: Assembled MAGs on ${on_string}">
118 <discover_datasets pattern="(?P&lt;name&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" directory="kraken2_extract_contigs"/> 118 <discover_datasets pattern="(?P&lt;name&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" directory="kraken2_extract_contigs"/>
119 </collection> 119 </collection>
120 </outputs> 120 </outputs>
121 <tests> 121 <tests>
122 <!--Test 01: long reads--> 122 <!--Test 01: long reads-->