Mercurial > repos > kkonganti > cfsan_centriflaken
comparison cfsan_centriflaken.xml @ 12:b55b48954b95
"planemo upload"
| author | kkonganti |
|---|---|
| date | Tue, 28 Jun 2022 13:06:08 -0400 |
| parents | 2b9c9bf4f6e9 |
| children | f2e896782704 |
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| 11:2b9c9bf4f6e9 | 12:b55b48954b95 |
|---|---|
| 52 <param name="fq_filename_delim_idx" type="integer" value="1" label="File name delimitor index (--fq_filename_delim_idx)" /> | 52 <param name="fq_filename_delim_idx" type="integer" value="1" label="File name delimitor index (--fq_filename_delim_idx)" /> |
| 53 <param name="centrifuge_extract_bug" type="text" value="Escherichia coli" label="Reads belonging to this taxa are extracted and a MAG is generated to allow for serotyping"/> | 53 <param name="centrifuge_extract_bug" type="text" value="Escherichia coli" label="Reads belonging to this taxa are extracted and a MAG is generated to allow for serotyping"/> |
| 54 <param name="genome_size" type="text" optional="true" value="5.5m" label="Estimated genome size" help="For example, 5m or 2.6g."> | 54 <param name="genome_size" type="text" optional="true" value="5.5m" label="Estimated genome size" help="For example, 5m or 2.6g."> |
| 55 <validator type="regex" message="Genome size must be a float or integer, optionally followed by the a unit prefix (kmg)">^([0-9]*[.])?[0-9]+[kmg]?$</validator> | 55 <validator type="regex" message="Genome size must be a float or integer, optionally followed by the a unit prefix (kmg)">^([0-9]*[.])?[0-9]+[kmg]?$</validator> |
| 56 </param> | 56 </param> |
| 57 <param name="runtime_profile" type="select" label="Run time profile" value="stdkondagac"> | 57 <param name="runtime_profile" type="select" label="Run time profile" value="kondagac"> |
| 58 <option value="stdkondagac">conda</option> | 58 <option value="kondagac">conda</option> |
| 59 <option value="stdcingularitygac">singularity</option> | 59 <option value="cingularitygac">singularity</option> |
| 60 </param> | 60 </param> |
| 61 </inputs> | 61 </inputs> |
| 62 <outputs> | 62 <outputs> |
| 63 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}"> | 63 <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}"> |
| 64 <discover_datasets pattern="multiqc_report.html" assign_primary_output="true" directory="cpipes-output"/> | 64 <discover_datasets pattern="multiqc_report.html" assign_primary_output="true" directory="cpipes-output"/> |