Mercurial > repos > kkonganti > cfsan_centriflaken

comparison cfsan_centriflaken.xml @ 63:d1efe888e1ed

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"planemo upload"
author kkonganti
date Wed, 13 Jul 2022 13:05:18 -0400
parents 770ce74dfc47
children ef8d8b8f41cc
comparison
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62:770ce74dfc47 63:d1efe888e1ed
11 #import os 11 #import os
12 #if (str($input_read_type_cond.input_read_type) == "single_long"): 12 #if (str($input_read_type_cond.input_read_type) == "single_long"):
13 #for $key in $input_read_type_cond.input.keys() 13 #for $key in $input_read_type_cond.input.keys()
14 ln -sf '$input_read_type_cond.input[$key]' './cpipes-input/$key'; 14 ln -sf '$input_read_type_cond.input[$key]' './cpipes-input/$key';
15 #end for 15 #end for
16 #elif (str($input_read_cond.input_read_type) == "paired"): 16 #elif (str($input_read_type_cond.input_read_type) == "paired"):
17 #for $key in $input_read_type_cond.input_pair.keys() 17 #for $key in $input_read_type_cond.input_pair.keys()
18 #set $read_R1 = os.path.basename($input_read_type_cond.input_pair[$key]['forward']) 18 #set $read_R1 = os.path.basename($input_read_type_cond.input_pair[$key]['forward'])
19 #set $read_R2 = os.path.basename($input_read_type_cond.input_pair[$key]['reverse']) 19 #set $read_R2 = os.path.basename($input_read_type_cond.input_pair[$key]['reverse'])
20 ln -sf '$input_read_type_cond.input_pair[$key]['forward']' './cpipes-input/$read_R1'; 20 ln -sf '$input_read_type_cond.input_pair[$key]['forward']' './cpipes-input/$read_R1';
21 ln -sf '$input_read_type_cond.input_pair[$key]['reverse']' './cpipes-input/$read_R2'; 21 ln -sf '$input_read_type_cond.input_pair[$key]['reverse']' './cpipes-input/$read_R2';