--- a/0.4.2/workflows/conf/centriflaken.config	Thu Jun 27 14:18:02 2024 -0400
+++ b/0.4.2/workflows/conf/centriflaken.config	Thu Jun 27 14:23:18 2024 -0400
@@ -2,13 +2,13 @@
     workflow_blueprint_by = 'Narjol.Gonzalez-Escalona@fda.hhs.gov'
     workflow_built_by = 'Kranti.Konganti@fda.hhs.gov'
     workflow_version = '0.2.1'
-    centrifuge_x = '/tool-local-data/cfsan-centriflaken-db/0/centrifuge/2022-04-12/ab'
+    centrifuge_x = '/galaxy/cfsan-centriflaken-db/0/centrifuge/2022-04-12/ab'
     centrifuge_extract_bug = 'Escherichia coli'
     centrifuge_save_aligned = false
     centrifuge_save_unaligned = false
     centrifuge_out_fmt_sam = false
     centrifuge_ignore_quals = false
-    kraken2_db = '/tool-local-data/cfsan-centriflaken-db/0/kraken2/standard-210914'
+    kraken2_db = '/galaxy/cfsan-centriflaken-db/0/kraken2/standard-210914'
     kraken2_confidence = '0.0'
     kraken2_quick = false
     kraken2_use_mpa_style = false
@@ -34,7 +34,7 @@
     ectyper_perc_opcov = 95
     ectyper_perc_hpcov = 50
     serotypefinder_run = (params.centrifuge_extract_bug ==~ /(?i)Salmonella/ ? false : true)
-    serotypefinder_db = '/tool-local-data/cfsan-centriflaken-db/0/serotypefinder/2.0.2'
+    serotypefinder_db = '/galaxy/cfsan-centriflaken-db/0/serotypefinder/2.0.2'
     serotypefinder_min_cov = 0.80
     serotypefinder_min_threshold = 0.85
     serotypefinder_x = true
@@ -48,10 +48,10 @@
     mlst_mincov = 10
     mlst_minscore = 50
     amrfinderplus_run = false
-    amrfinderplus_db = '/tool-local-data/cfsan-centriflaken-db/0/amrfinderplus/3.10.24/latest'
+    amrfinderplus_db = '/galaxy/cfsan-centriflaken-db/0/amrfinderplus/3.10.24/latest'
     amrfinderplus_genes = true
     abricate_run = true
-    abricate_datadir = '/tool-local-data/cfsan-centriflaken-db/0/abricate/1.0.1/db'
+    abricate_datadir = '/galaxy/cfsan-centriflaken-db/0/abricate/1.0.1/db'
     abricate_minid = 90
     abricate_mincov = 80
     abricate_summary_run = true