Mercurial > repos > kkonganti > cfsan_centriflaken
diff cfsan_centriflaken.xml @ 67:04c9f550eb08
"planemo upload"
| author | kkonganti |
|---|---|
| date | Wed, 13 Jul 2022 13:55:47 -0400 |
| parents | ccc58509834c |
| children | 44d4e4078aaa |
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--- a/cfsan_centriflaken.xml Wed Jul 13 13:47:12 2022 -0400 +++ b/cfsan_centriflaken.xml Wed Jul 13 13:55:47 2022 -0400 @@ -15,10 +15,10 @@ #end for #elif (str($input_read_type_cond.input_read_type) == "paired"): #for $key in $input_read_type_cond.input_pair.keys() - #set $read_R1 = os.path.basename($input_read_type_cond.input_pair[$key]['forward']) - #set $read_R2 = os.path.basename($input_read_type_cond.input_pair[$key]['reverse']) - ln -sf '$input_read_type_cond.input_pair[$key]['forward']' './cpipes-input/$read_R1'; - ln -sf '$input_read_type_cond.input_pair[$key]['reverse']' './cpipes-input/$read_R2'; + #set $read_R1 = os.path.basename(str($input_read_type_cond.input_pair[$key]['forward'])) + #set $read_R2 = os.path.basename(str($input_read_type_cond.input_pair[$key]['reverse'])) + ln -sf "$input_read_type_cond.input_pair[$key]['forward']" './cpipes-input/$read_R1'; + ln -sf "$input_read_type_cond.input_pair[$key]['reverse']" './cpipes-input/$read_R2'; #end for #end if $__tool_directory__/0.2.1/cpipes @@ -96,7 +96,7 @@ label="List of Dataset pairs" /> <conditional name="pipeline_cond"> <param name="pipeline" type="select" label="CPIPES Workflow name" - help="centriflaken_hy selected for paired-end short reads."> + help="Auto selected centriflaken_hy for paired-end short reads."> <option value="centriflaken_hy" selected="true">centriflaken_hy</option> </param> <when value="centriflaken_hy">