Mercurial > repos > kkonganti > cfsan_centriflaken

diff 0.4.0/bin/fastq_dir_to_samplesheet.py @ 104:17890124001d

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload"
author kkonganti
date Sun, 28 Aug 2022 00:37:10 -0400
parents ce6d9548fe89
children
line wrap: on
line diff
--- a/0.4.0/bin/fastq_dir_to_samplesheet.py	Thu Aug 04 10:58:46 2022 -0400
+++ b/0.4.0/bin/fastq_dir_to_samplesheet.py	Sun Aug 28 00:37:10 2022 -0400
@@ -106,7 +106,7 @@
         abs_fq_files = glob.glob(os.path.join(fastq_dir, f"**", f"*{extension}"), recursive=True)
         return sorted(
             [
-                fq for _, fq in enumerate(abs_fq_files) if re.match('^((?!undetermined|unclassified|fail|class|qc|downloads).)*$', fq, flags=re.IGNORECASE)
+                fq for _, fq in enumerate(abs_fq_files) if re.match('^((?!undetermined|unclassified|downloads).)*$', fq, flags=re.IGNORECASE)
             ]
         )