Mercurial > repos > kkonganti > cfsan_centriflaken
diff 0.2.1/README.md @ 47:30191f39a957
"planemo upload"
author | kkonganti |
---|---|
date | Mon, 11 Jul 2022 12:19:48 -0400 |
parents | 77494b0fa3c7 |
children |
line wrap: on
line diff
--- a/0.2.1/README.md Thu Jul 07 10:37:59 2022 -0400 +++ b/0.2.1/README.md Mon Jul 11 12:19:48 2022 -0400 @@ -20,7 +20,7 @@ Following is the example of how to run the `centriflaken` pipeline on the **CFSAN** raven cluster. ```bash -module load cpipes/0.1.0-test +module load cpipes/0.2.1 cpipes --pipeline centriflaken [options] ``` @@ -35,15 +35,14 @@ --pipeline centriflaken \ --input /path/to/fastq_pass_dir \ --output /path/to/where/output/should/go \ - --flye_nano_raw \ - --user_email Firt.Last@fda.hhs.gov \ + --user_email First.Last@fda.hhs.gov \ -profile raven ``` The above command would run the pipeline and store the output wherever the author of the workflow decided it to be and the **NEXTFLOW** reports are always stored in the current working directory from where `cpipes` is run. For example, for the above command, a directory called `CPIPES-centriflaken` would hold all the **NEXTFLOW** related logs, reports and trace files. -### **PRE ALPHA** +### **BETA** --- -This modular structure and flow is still in rapid development and may change depending on assessment of various computational topics and other considerations. +The development of the modular structure and flow is an ongoing effort and may change depending on assessment of various computational topics and other considerations.