diff 0.2.1/README.md @ 47:30191f39a957

"planemo upload"
author kkonganti
date Mon, 11 Jul 2022 12:19:48 -0400
parents 77494b0fa3c7
children
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--- a/0.2.1/README.md	Thu Jul 07 10:37:59 2022 -0400
+++ b/0.2.1/README.md	Mon Jul 11 12:19:48 2022 -0400
@@ -20,7 +20,7 @@
 Following is the example of how to run the `centriflaken` pipeline on the **CFSAN** raven cluster.
 
 ```bash
-module load cpipes/0.1.0-test
+module load cpipes/0.2.1
 
 cpipes --pipeline centriflaken [options]
 ```
@@ -35,15 +35,14 @@
     --pipeline centriflaken \
     --input /path/to/fastq_pass_dir \
     --output /path/to/where/output/should/go \
-    --flye_nano_raw \
-    --user_email Firt.Last@fda.hhs.gov \
+    --user_email First.Last@fda.hhs.gov \
     -profile raven
 ```
 
 The above command would run the pipeline and store the output wherever the author of the workflow decided it to be and the **NEXTFLOW** reports are always stored in the current working directory from where `cpipes` is run. For example, for the above command, a directory called `CPIPES-centriflaken` would hold all the **NEXTFLOW**
 related logs, reports and trace files.
 
-### **PRE ALPHA**
+### **BETA**
 
 ---
-This modular structure and flow is still in rapid development and may change depending on assessment of various computational topics and other considerations.
+The development of the modular structure and flow is an ongoing effort and may change depending on assessment of various computational topics and other considerations.