--- a/0.2.1/workflows/centriflaken.nf	Thu Jul 07 10:37:59 2022 -0400
+++ b/0.2.1/workflows/centriflaken.nf	Mon Jul 11 12:19:48 2022 -0400
@@ -107,14 +107,14 @@
 
         FASTQC ( ch_processed_reads )
 
-        CENTRIFUGE_CLASSIFY( ch_processed_reads )
+        CENTRIFUGE_CLASSIFY ( ch_processed_reads )
 
-        CENTRIFUGE_PROCESS(
+        CENTRIFUGE_PROCESS (
             CENTRIFUGE_CLASSIFY.out.report
                 .join( CENTRIFUGE_CLASSIFY.out.output )
         )
 
-        ch_processed_reads.join( CENTRIFUGE_PROCESS.out.extracted )
+        ch_processed_reads.join ( CENTRIFUGE_PROCESS.out.extracted )
             .set { ch_centrifuge_extracted }
 
         SEQKIT_GREP ( ch_centrifuge_extracted )
@@ -128,7 +128,7 @@
 
         ch_flye_assembly.ifEmpty { [ false, false ] }
 
-        KRAKEN2_CLASSIFY( ch_flye_assembly )
+        KRAKEN2_CLASSIFY ( ch_flye_assembly )
 
         KRAKEN2_EXTRACT_CONTIGS (
             ch_flye_assembly
@@ -213,7 +213,7 @@
             .map { it -> [ it[0], it[1].flatten() ]}
             .set { ch_mqc_custom_tbl }
 
-        TABLE_SUMMARY( ch_mqc_custom_tbl )
+        TABLE_SUMMARY ( ch_mqc_custom_tbl )
 
         DUMP_SOFTWARE_VERSIONS (
             software_versions
@@ -246,7 +246,7 @@
             .collect()
             .set { ch_multiqc }
 
-        MULTIQC( ch_multiqc )
+        MULTIQC ( ch_multiqc )
 }
 
 /*
@@ -308,7 +308,7 @@
 
     Map helptext = [:]
 
-    helptext.putAll(
+    helptext.putAll (
         fastqEntryPointHelp() +
         kraken2Help(params).text +
         centrifugeHelp(params).text +