Mercurial > repos > kkonganti > cfsan_centriflaken

diff cfsan_centriflaken.xml @ 72:306431b9bf86

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"planemo upload"
author kkonganti
date Wed, 13 Jul 2022 14:17:13 -0400
parents 783721d5b326
children 61b7ab692529
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--- a/cfsan_centriflaken.xml	Wed Jul 13 14:14:38 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 13 14:17:13 2022 -0400
@@ -17,8 +17,10 @@
         #for _, $pair in enumerate($input_read_type_cond.input_pair)
             #set $read_R1 = os.path.basename(str($pair.forward))
             #set $read_R2 = os.path.basename(str($pair.reverse))
-	        ln -sf '$pair.forward' './cpipes-input/$read_R1.name';
-	        ln -sf '$pair.reverse' './cpipes-input/$read_R2.name';
+            #set $read_R1_name = str($read_R1.name)
+            #set $read_R2_name = str($read_R2.name)
+	        ln -sf '$pair.forward' './cpipes-input/$read_R1_name';
+	        ln -sf '$pair.reverse' './cpipes-input/$read_R2_name';
 	    #end for
     #end if
 	$__tool_directory__/0.2.1/cpipes