Mercurial > repos > kkonganti > cfsan_centriflaken

diff cfsan_centriflaken.xml @ 23:4774fc77e872

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"planemo upload"
author kkonganti
date Wed, 29 Jun 2022 09:40:21 -0400
parents 0c42dc147b29
children 05b6b4edfd58
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--- a/cfsan_centriflaken.xml	Wed Jun 29 09:38:17 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jun 29 09:40:21 2022 -0400
@@ -32,7 +32,7 @@
 	--flye_genome_size '${genome_size}'
 	-profile $runtime_profile
     -resume;
-    cp \${pwd_path}/cpipes-output/${pipeline}-multiqc/multiqc_report.html \${pwd_path}/;
+    cp cpipes-output/${pipeline}-multiqc/multiqc_report.html multiqc_report.html;
     ]]></command>
     <inputs>
         <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger" label="Input read collection" />