--- a/cfsan_centriflaken.xml	Tue Jul 19 10:14:15 2022 -0400
+++ b/cfsan_centriflaken.xml	Tue Jul 19 10:22:51 2022 -0400
@@ -19,8 +19,8 @@
 	    #end for
     #elif (str($input_read_type_cond.input_read_type) == "paired"):
 	    #for _, $pair in enumerate($input_read_type_cond.input_pair)
-            #set read_R1 = re.sub('[^\s\w\-]', '_', str($pair.forward.name))
-            #set read_R2 = re.sub('[^\s\w\-]', '_', str($pair.reverse.name))
+            #set read_R1 = re.sub('\:forward', '_forward', str($pair.forward.name))
+            #set read_R2 = re.sub('\:reverse', '_reverse', str($pair.reverse.name))
             #if not str($pair.forward.name).endswith(('.fastq', '.fastq.gz')):
 	            #set read_R1 = $read_R1 + str('.') + str($pair.forward.ext)
             #end if