Mercurial > repos > kkonganti > cfsan_centriflaken

diff cfsan_centriflaken.xml @ 64:ef8d8b8f41cc

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"planemo upload"
author kkonganti
date Wed, 13 Jul 2022 13:06:51 -0400
parents d1efe888e1ed
children ec3fca35a622
line wrap: on
line diff
--- a/cfsan_centriflaken.xml	Wed Jul 13 13:05:18 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 13 13:06:51 2022 -0400
@@ -38,15 +38,15 @@
             --flye_pacbio_hifi true --flye_nano_raw false
         #end if
     #elif ($input_read_type_cond.pipeline_cond.pipeline == "centriflaken_hy"):
-        #if (str($input_read_cond.input_read_type) == "single_long"):
+        #if (str($input_read_type_cond.input_read_type) == "single_long"):
             --fq_single_end true
-        #elif (str($input_read_cond.input_read_type) == "paired"):
-            --fq_single_end false --fq2_suffix '${input_read_cond.fq2_suffix}'
+        #elif (str($input_read_type_cond.input_read_type) == "paired"):
+            --fq_single_end false --fq2_suffix '${input_read_type_cond.fq2_suffix}'
         #end if
     #end if
 	--input \${pwd_path}/cpipes-input
 	--output \${pwd_path}/cpipes-output
-    --fq_suffix '${input_read_cond.fq_suffix}'
+    --fq_suffix '${input_read_type_cond.fq_suffix}'
     #if ($fq_filter_by_len != ""):
         --fq_filter_by_len $fq_filter_by_len
     #end if