kkonganti@105: process SAMPLESHEET_CHECK {
kkonganti@105:     tag "$samplesheet"
kkonganti@105:     label "process_femto"
kkonganti@105: 
kkonganti@105:     module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
kkonganti@105:     conda (params.enable_conda ? "conda-forge::python=3.9.5" : null)
kkonganti@105:     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
kkonganti@105:         'https://depot.galaxyproject.org/singularity/python:3.9--1' :
kkonganti@105:         'quay.io/biocontainers/python:3.9--1' }"
kkonganti@105: 
kkonganti@105:     input:
kkonganti@105:         path samplesheet
kkonganti@105: 
kkonganti@105:     output:
kkonganti@105:         path '*.csv'       , emit: csv
kkonganti@105:         path "versions.yml", emit: versions
kkonganti@105: 
kkonganti@105:     when:
kkonganti@105:         task.ext.when == null || task.ext.when
kkonganti@105: 
kkonganti@105:     script: // This script is bundled with the pipeline, in nf-core/rnaseq/bin/
kkonganti@105:         """
kkonganti@105:         check_samplesheet.py \\
kkonganti@105:             $samplesheet \\
kkonganti@105:             samplesheet.valid.csv
kkonganti@105: 
kkonganti@105:         cat <<-END_VERSIONS > versions.yml
kkonganti@105:         "${task.process}":
kkonganti@105:             python: \$( python --version | sed 's/Python //g' )
kkonganti@105:         END_VERSIONS
kkonganti@105:         """
kkonganti@105: }