# HG changeset patch
# User kkonganti
# Date 1657204679 14400
# Node ID 0dd0ebe5cddf65c184d6ccfeabe7089930de0ae3
# Parent  62d848f2a12898661ff2340ee5c4f3d4e9a80a85
"planemo upload"

diff -r 62d848f2a128 -r 0dd0ebe5cddf cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Thu Jun 30 15:28:32 2022 -0400
+++ b/cfsan_centriflaken.xml	Thu Jul 07 10:37:59 2022 -0400
@@ -47,6 +47,8 @@
     -resume;
     mv './cpipes-output/${pipeline}-multiqc/multiqc_report.html' './multiqc_report.html';
     mv './cpipes-output/${pipeline}-results/kraken2_extract_contigs' kraken2_extract_contigs;
+    rm -rf ./cpipes-output;
+    rm -rf ./work
     ]]></command>
     <inputs>
         <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger" label="Input read collection" />