# HG changeset patch
# User kkonganti
# Date 1720033343 14400
# Node ID 1bb0dacefa6d2bd15bdd715af07661734c92656e
# Parent  d4439431d12c0ff86e3ee085d227d7a2b86fdd58
planemo upload

diff -r d4439431d12c -r 1bb0dacefa6d cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Wed Jul 03 15:00:37 2024 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 03 15:02:23 2024 -0400
@@ -73,9 +73,9 @@
     #end if
     -work-dir \${work_dir}
 	-profile gxkubernetes;
-    mv "\${work_dir}/cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html" './multiqc_report.html' > /dev/null 2>&1 || exit 1;
+    mv "\${work_dir}/cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html" './multiqc_report.html' || exit 1;
     mv "\${work_dir}/cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-results/kraken2_extract_contigs" kraken2_extract_contigs > /dev/null 2>&1 || exit 1;
-    rm -rf "\${work_dir}/cpipes-output" > /dev/null 2>&1 || exit 1;
+    rm -rf "\${work_dir}/cpipes-output" || exit 1;
     ]]></command>
     <inputs>
         <conditional name="input_read_type_cond">