# HG changeset patch
# User kkonganti
# Date 1657745393 14400
# Node ID 21149dc86243ccb8bed842bbea6f2732498841b2
# Parent  460fa12fd793cb0d5c1fd2dc2c208313b7f38d64
"planemo upload"

diff -r 460fa12fd793 -r 21149dc86243 cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Wed Jul 13 16:47:42 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 13 16:49:53 2022 -0400
@@ -10,12 +10,12 @@
     pwd_path=\$(pwd);
     #if (str($input_read_type_cond.input_read_type) == "single_long"):
 	    #for _, $unpaired in enumerate($input_read_type_cond.input):
-            #if not $unpaired.ext.endswith(('.fastq', '.fastq.gz')):
+            #if not $unpaired.name.endswith(('.fastq', '.fastq.gz')):
                 #set read1 = str($unpaired.name) + str('.') + str($unpaired.ext)
             #else:
                 #set read1 = str($unpaired.name)
             #end if
-            echo $unpaired.ext && ln -sf '$unpaired' './cpipes-input/$read1';
+            ln -sf '$unpaired' './cpipes-input/$read1';
 	    #end for
     #elif (str($input_read_type_cond.input_read_type) == "paired"):
 	    #for _, $pair in enumerate($input_read_type_cond.input_pair)