# HG changeset patch
# User kkonganti
# Date 1656362585 14400
# Node ID 29a590703d3ead003afb22a162483d0643cde66d
# Parent  e0d902b50cff29442bbbedf53d0452b4729dfc93
"planemo upload"

diff -r e0d902b50cff -r 29a590703d3e cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Mon Jun 27 16:00:59 2022 -0400
+++ b/cfsan_centriflaken.xml	Mon Jun 27 16:43:05 2022 -0400
@@ -6,11 +6,11 @@
     </requirements>    
     <version_command>nextflow -version</version_command>
     <command detect_errors="exit_code"><![CDATA[
-	mkdir -p cpipes-input
+	mkdir -p cpipes-input &&
 	#for $input in $LIST
 	    ln -sf '$input' './cpipes-input/${input.element_identifier}';
 	#end for
-	pwd_path=\$(pwd)
+	pwd_path=\$(pwd) &&
 	$__tool_directory__/0.2.1/cpipes
     #if (reads.type == "long"):
         --pipeline centriflaken