# HG changeset patch
# User kkonganti
# Date 1657731560 14400
# Node ID 29fec32b8f47f58526da697674c0aa755a2ee811
# Parent  5c0901d0d8a8cefc12999fa6171eb87d57bfa7bd
"planemo upload"

diff -r 5c0901d0d8a8 -r 29fec32b8f47 cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Wed Jul 13 12:56:29 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 13 12:59:20 2022 -0400
@@ -22,7 +22,7 @@
 	    #end for
     #end if
 	$__tool_directory__/0.2.1/cpipes
-    --pipeline $input_read_type_cond.pipeline
+    --pipeline $input_read_type_cond.pipeline_cond.pipeline
     #if ($input_read_type_cond.pipeline_cond.pipeline == "centriflaken"):
         --fq_single_end true
         --flye_genome_size '${genome_size}'
@@ -62,12 +62,12 @@
     <inputs>
         <conditional name="input_read_type_cond">
             <param name="input_read_type" type="select" label="Select the read collection type">
-                <option value="single_long" selected="true">Unpaired reads (i.e. Single-End short reads/Long reads)</option>
+                <option value="single_long" selected="true">Unpaired reads (i.e. Single-End short reads or Long reads)</option>
                 <option value="paired">Paired-End reads</option>
             </param>
             <when value="single_long">
                 <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger"
-                    label="Dataset list of unpaired short reads / long reads" />
+                    label="Dataset list of unpaired short reads or long reads" />
                 <conditional name="pipeline_cond">
                     <param name="pipeline" type="select" label="CPIPES Workflow name"
                         help="centriflaken: for long reads (Nanopore or PacBio). centriflaken_hy: for short reads (paired or unpaired). Default: centriflaken">