# HG changeset patch
# User kkonganti
# Date 1657735339 14400
# Node ID 44d4e4078aaa123637fb2b5c3859254ac5742aa1
# Parent  04c9f550eb0852a367e2d2e8533ebc516b82a545
"planemo upload"

diff -r 04c9f550eb08 -r 44d4e4078aaa cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Wed Jul 13 13:55:47 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 13 14:02:19 2022 -0400
@@ -17,8 +17,8 @@
         #for $key in $input_read_type_cond.input_pair.keys()
             #set $read_R1 = os.path.basename(str($input_read_type_cond.input_pair[$key]['forward']))
             #set $read_R2 = os.path.basename(str($input_read_type_cond.input_pair[$key]['reverse']))
-	        ln -sf "$input_read_type_cond.input_pair[$key]['forward']" './cpipes-input/$read_R1';
-            ln -sf "$input_read_type_cond.input_pair[$key]['reverse']" './cpipes-input/$read_R2';
+	        ln -sf "$input_read_type_cond.input_pair[$key]['forward']" './cpipes-input/$key';
+            ln -sf "$input_read_type_cond.input_pair[$key]['reverse']" './cpipes-input/$key';
 	    #end for
     #end if
 	$__tool_directory__/0.2.1/cpipes