# HG changeset patch
# User kkonganti
# Date 1656463110 14400
# Node ID 4f31b641f6fd862848f76e58a76ce83e1a50ddf6
# Parent  1cb92deb15f867a50f6549b393ff39f123fd2a5f
"planemo upload"

diff -r 1cb92deb15f8 -r 4f31b641f6fd cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Tue Jun 28 19:54:23 2022 -0400
+++ b/cfsan_centriflaken.xml	Tue Jun 28 20:38:30 2022 -0400
@@ -61,11 +61,9 @@
     </inputs>
     <outputs>
         <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}" from_work_dir="./cpipes-output/${pipeline}-multiqc/multiqc_report.html"/>
-            <!-- <discover_datasets pattern="(?P&lt;name&gt;.*)\.html" ext="html" assign_primary_output="true" directory="./cpipes-output/${pipeline}-multiqc"/> -->
-        <!-- </data> -->
-        <data name="assembled_mags" format="fasta" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}">
-            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" visible="true" directory="./cpipes-output/${pipeline}-results/kraken2_extract_contigs"/>
-        </data>
+        <collection name="assembled_mags" type="list" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}">
+            <discover_datasets pattern="(?P&lt;name&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" directory="./cpipes-output/${pipeline}-results/kraken2_extract_contigs"/>
+        </collection>
     </outputs>
     <tests>
         <!--Test 01: long reads-->
@@ -79,7 +77,7 @@
             </param>
             <param name="fq_suffix" value=".fastq.gz"/>
             <output name="multiqc_report" file="multiqc_report.html" ftype="html" compare="sim_size"/>
-            <output name="assembled_mags" file="FAL11127.assembly_filtered.contigs.fasta" ftype="fasta" compare="sim_size"/>
+            <!-- <output name="assembled_mags" file="FAL11127.assembly_filtered.contigs.fasta" ftype="fasta" compare="sim_size"/> -->
         </test>
     </tests>
     <help><![CDATA[