# HG changeset patch
# User kkonganti
# Date 1720031025 14400
# Node ID 9cf321470e20e5a5b2b76e1c45b361fda4da36d9
# Parent  dcd41789fb614da2656e7175dee3804be5109cb2
planemo upload

diff -r dcd41789fb61 -r 9cf321470e20 cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Wed Jul 03 13:11:34 2024 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 03 14:23:45 2024 -0400
@@ -7,7 +7,8 @@
     <command detect_errors="exit_code"><![CDATA[
     time_stamp=\$(date +%Y-%m-%d-%s);
     work_dir="/galaxy/nf-work-dirs/centriflaken_work_dir-"\${time_stamp};
-    input_path="\${work_dir}/cpipes-input";
+    #input_path="\${work_dir}/cpipes-input";
+    input_path=\$(pwd)/cpipes-input
     mkdir -p \$work_dir || exit 1;
     mkdir -p "\${input_path}" || exit 1;
     #import re