# HG changeset patch
# User kkonganti
# Date 1656509836 14400
# Node ID abe3bc84455bdd41d11e5a95af786ede0b77b238
# Parent  91480ddc3fcd70d7c3477cb6105bf813e3cc4c29
"planemo upload"

diff -r 91480ddc3fcd -r abe3bc84455b cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Wed Jun 29 09:33:18 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jun 29 09:37:16 2022 -0400
@@ -32,7 +32,7 @@
 	--flye_genome_size '${genome_size}'
 	-profile $runtime_profile
     -resume;
-    cp ./cpipes-output/${pipeline}-multiqc/multiqc_report.html .;
+    cp \${pwd_path}/cpipes-output/${pipeline}-multiqc/multiqc_report.html ${pwd_path}/;
     ]]></command>
     <inputs>
         <param name="input" type="data_collection" collection_type="list" format="fastq,fastq.gz,fastqsanger.gz,fastqsanger" label="Input read collection" />