# HG changeset patch
# User kkonganti
# Date 1657744965 14400
# Node ID e389a6f6aa3b0dc1ebf196a7f518e63ac074da13
# Parent  ffa207a7348329e4a7f2b5a419f028cc2d931234
"planemo upload"

diff -r ffa207a73483 -r e389a6f6aa3b cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Wed Jul 13 16:40:14 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 13 16:42:45 2022 -0400
@@ -11,11 +11,12 @@
     #if (str($input_read_type_cond.input_read_type) == "single_long"):
 	    #for _, $unpaired in enumerate($input_read_type_cond.input):
             #if not $unpaired.ext.endswith(('fastq', 'fastq.gz')):
-                #set read_R1 = str($unpaired.name) + str('.') + str($unpaired.ext)
+                #set read1 = str($unpaired.name) + str('.') + str($unpaired.ext)
             #else:
-                #set read_R1 = str($unpaired.name)
+                #set read1 = str($unpaired.name)
             #end if
-            ln -sf '$unpaired' './cpipes-input/$read_R1';
+            echo $unpaired.ext;
+            ln -sf '$unpaired' './cpipes-input/$read1';
 	    #end for
     #elif (str($input_read_type_cond.input_read_type) == "paired"):
 	    #for _, $pair in enumerate($input_read_type_cond.input_pair)