# HG changeset patch
# User kkonganti
# Date 1656443220 14400
# Node ID f2e89678270401d39004492c2f6d6de47d572cae
# Parent  b55b48954b957620e3dab6fa73efbe37d83c94c4
"planemo upload"

diff -r b55b48954b95 -r f2e896782704 cfsan_centriflaken.xml
--- a/cfsan_centriflaken.xml	Tue Jun 28 13:06:08 2022 -0400
+++ b/cfsan_centriflaken.xml	Tue Jun 28 15:07:00 2022 -0400
@@ -61,10 +61,10 @@
     </inputs>
     <outputs>
         <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}">
-            <discover_datasets pattern="multiqc_report.html" assign_primary_output="true" directory="cpipes-output"/>
+            <discover_datasets pattern="multiqc_report.html" assign_primary_output="true" directory="cpipes-output/${pipeline}-multiqc"/>
         </data>
-        <data name="assembled_mags" format="fasta" label="CENTRIFLAKEN: Assembled MAGs">
-            <discover_datasets pattern=".*\.assembly_filtered_contigs.fasta" visible="true" directory="cpipes-output"/>
+        <data name="assembled_mags" format="fasta" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}">
+            <discover_datasets pattern=".*\.assembly_filtered_contigs.fasta" visible="true" directory="cpipes-output/${pipeline}-results/kraken2_extract_contigs"/>
         </data>
     </outputs>
     <tests>