Mercurial > repos > kkonganti > cfsan_centriflaken

changeset 36:1d6557e7db72

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"planemo upload"
author kkonganti
date Wed, 29 Jun 2022 19:08:47 -0400
parents dc9258195982
children a047ee0e34ae
files 0.2.1/conf/modules.config cfsan_centriflaken.xml
diffstat 2 files changed, 14 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/0.2.1/conf/modules.config	Wed Jun 29 16:31:26 2022 -0400
+++ b/0.2.1/conf/modules.config	Wed Jun 29 19:08:47 2022 -0400
@@ -18,50 +18,62 @@
 
     withLabel: 'process_femto' {
         cpus = 2
+        memory = 64.GB
     }
 
     withLabel: 'process_pico' {
         cpus = 2
+        memory = 64.GB
     }
 
     withLabel: 'process_nano' {
         cpus = 4
+        memory = 64.GB
     }
 
     withLabel: 'process_micro' {
         cpus = 8
+        memory = 64.GB
     }
 
     withLabel: 'process_only_mem_low' {
         cpus = 2
+        memory = 64.GB
     }
 
     withLabel: 'process_only_mem_medium' {
         cpus = 2
+        memory = 64.GB
     }
 
     withLabel: 'process_only_mem_high' {
         cpus = 2
+        memory = 64.GB
     }
 
     withLabel: 'process_low' {
         cpus = 8
+        memory = 64.GB
     }
 
     withLabel: 'process_medium' {
         cpus = 8
+        memory = 64.GB
     }
 
     withLabel: 'process_high' {
         cpus = 8
+        memory = 64.GB
     }
 
     withLabel: 'process_higher' {
         cpus = 8
+        memory = 64.GB
     }
 
     withLabel: 'process_gigantic' {
         cpus = 8
+        memory = 64.GB
     }
 }
 
--- a/cfsan_centriflaken.xml	Wed Jun 29 16:31:26 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jun 29 19:08:47 2022 -0400
@@ -81,8 +81,8 @@
         </param>
     </inputs>
     <outputs>
-        <data name="multiqc_report" format="html" label="MultiQC Report on ${on_string}" from_work_dir="multiqc_report.html"/>
-        <collection name="assembled_mags" type="list" label="CENTRIFLAKEN: Assembled MAGs on ${on_string}">
+        <data name="multiqc_report" format="html" label="${pipeline}: MultiQC Report on ${on_string}" from_work_dir="multiqc_report.html"/>
+        <collection name="assembled_mags" type="list" label="${pipeline}: Assembled MAGs on ${on_string}">
             <discover_datasets pattern="(?P&lt;name&gt;.*)\.assembly_filtered_contigs\.fasta" ext="fasta" directory="kraken2_extract_contigs"/>
         </collection>
     </outputs>