Mercurial > repos > kkonganti > cfsan_centriflaken

changeset 82:460fa12fd793

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"planemo upload"
author kkonganti
date Wed, 13 Jul 2022 16:47:42 -0400
parents e389a6f6aa3b
children 21149dc86243
files cfsan_centriflaken.xml
diffstat 1 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_centriflaken.xml	Wed Jul 13 16:42:45 2022 -0400
+++ b/cfsan_centriflaken.xml	Wed Jul 13 16:47:42 2022 -0400
@@ -10,13 +10,12 @@
     pwd_path=\$(pwd);
     #if (str($input_read_type_cond.input_read_type) == "single_long"):
 	    #for _, $unpaired in enumerate($input_read_type_cond.input):
-            #if not $unpaired.ext.endswith(('fastq', 'fastq.gz')):
+            #if not $unpaired.ext.endswith(('.fastq', '.fastq.gz')):
                 #set read1 = str($unpaired.name) + str('.') + str($unpaired.ext)
             #else:
                 #set read1 = str($unpaired.name)
             #end if
-            echo $unpaired.ext;
-            ln -sf '$unpaired' './cpipes-input/$read1';
+            echo $unpaired.ext && ln -sf '$unpaired' './cpipes-input/$read1';
 	    #end for
     #elif (str($input_read_type_cond.input_read_type) == "paired"):
 	    #for _, $pair in enumerate($input_read_type_cond.input_pair)