Mercurial > repos > kkonganti > cfsan_centriflaken
changeset 62:770ce74dfc47
"planemo upload"
author | kkonganti |
---|---|
date | Wed, 13 Jul 2022 13:03:50 -0400 |
parents | 29fec32b8f47 |
children | d1efe888e1ed |
files | cfsan_centriflaken.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/cfsan_centriflaken.xml Wed Jul 13 12:59:20 2022 -0400 +++ b/cfsan_centriflaken.xml Wed Jul 13 13:03:50 2022 -0400 @@ -54,8 +54,8 @@ --fq_filename_delim_idx $fq_filename_delim_idx --centrifuge_extract_bug '${centrifuge_extract_bug}' -profile kondagac; - mv './cpipes-output/${pipeline}-multiqc/multiqc_report.html' './multiqc_report.html' || exit 1; - mv './cpipes-output/${pipeline}-results/kraken2_extract_contigs' kraken2_extract_contigs || exit 1; + mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html' './multiqc_report.html' || exit 1; + mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-results/kraken2_extract_contigs' kraken2_extract_contigs || exit 1; rm -rf ./cpipes-output || exit 1; rm -rf ./work || exit 1 ]]></command>