Mercurial > repos > kkonganti > cfsan_centriflaken

changeset 106:c02d3cf60fe0

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"planemo upload"
author kkonganti
date Thu, 27 Jun 2024 14:18:02 -0400
parents 52045ea4679d
children 0013f0564dd3
files cfsan_centriflaken.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_centriflaken.xml	Thu Jun 27 14:17:26 2024 -0400
+++ b/cfsan_centriflaken.xml	Thu Jun 27 14:18:02 2024 -0400
@@ -72,7 +72,7 @@
     #if (str($input_read_type_cond.pipeline_cond.rm_dup_seqs) == "true"):
         --seqkit_rmdup_run true
     #end if
-	-profile kondagac;
+	-profile gxkubernetes;
     mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-multiqc/multiqc_report.html' './multiqc_report.html' > /dev/null 2>&1 || exit 1;
     mv './cpipes-output/${input_read_type_cond.pipeline_cond.pipeline}-results/kraken2_extract_contigs' kraken2_extract_contigs > /dev/null 2>&1 || exit 1;
     rm -rf ./cpipes-output > /dev/null 2>&1 || exit 1;