--- a/cfsan_centriflaken.xml	Tue Jul 12 16:37:03 2022 -0400
+++ b/cfsan_centriflaken.xml	Tue Jul 12 16:42:16 2022 -0400
@@ -116,7 +116,7 @@
 
 Centriflaken suite of automated data analysis pipelines are based on Nextflow DSL2 developed at CFSAN, FDA. These pipelines allow rapid 
 and effective construction of metagenomic assembled genomes (MAGs) to enable bacterial source-tracking. It is based on methods described in our 
-previous publication ([Maguire *et al*, 2021](doi: https://doi.org/10.1371/journal.pone.0245172)).
+previous publication (<a href="https://doi.org/10.1371/journal.pone.0245172" target="_blank">Maguire *et al*, 2021</a>).
 
 ----
 
@@ -127,7 +127,7 @@
 The CPIPES - Centriflaken Nextflow pipeline has been wrapped to make it work in Galaxy. It takes in either paired or unpaired short reads or long reads, generates MAGs and performs 
 in silico-based analysis (i.e., virulence gene finding). Additionally, AMR gene finding analysis is also included in Centriflaken and performed on MAGs 
 of interest. The final summary plots and tables can be downloaded from the provided MultiQC HTML report generated as part of the pipeline. 
-The Centriflaken pipeline was validated with data from our previously published method ([Maguire *et al*, 2021](doi: https://doi.org/10.1371/journal.pone.0245172)) and was able to replicate the detection 
+The Centriflaken pipeline was validated with data from our previously published method (<a href="https://doi.org/10.1371/journal.pone.0245172" target="_blank">Maguire *et al*, 2021</a>) and was able to replicate the detection 
 and classification of STECs for each sample. We tested the pipeline with Nanopore data obtained from 21 additional enriched samples from 
 irrigation water and was able to perform the entire precision metagenomics analysis in less than 5 hours for all of them. All the original testing and validation was 
 done on the command line on the CFSAN Raven2 HPC Cluster.