Mercurial > repos > kkonganti > cfsan_cronology

comparison 0.1.0/workflows/cronology.nf @ 9:5eaaf749472c

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"planemo upload"
author kkonganti
date Tue, 28 Nov 2023 15:26:51 -0500
parents c8597e9e1a97
children
comparison
equal deleted inserted replaced
8:d8913a37810a 9:5eaaf749472c
201 201
202 POLYPOLISH.out.polished 202 POLYPOLISH.out.polished
203 .set { ch_assembly } 203 .set { ch_assembly }
204 204
205 software_versions 205 software_versions
206 .mix(POLYPOLISH.out.versions) 206 .mix(
207 BWA_IDX_MEM.out.versions,
208 POLYPOLISH.out.versions
209 )
210 .set { software_versions }
207 } 211 }
208 212
209 ch_assembly 213 ch_assembly
210 .combine( DOWNLOAD_REF_GENOME.out.fasta ) 214 .combine( DOWNLOAD_REF_GENOME.out.fasta )
211 .combine( DOWNLOAD_REF_GENOME.out.gff ) 215 .combine( DOWNLOAD_REF_GENOME.out.gff )
250 } 254 }
251 .groupTuple(by: [0]) 255 .groupTuple(by: [0])
252 ) 256 )
253 257
254 software_versions 258 software_versions
255 .mix(PIRATE.out.versions) 259 .mix( PIRATE.out.versions )
260 .set { software_versions }
256 } 261 }
257 262
258 RMLST_POST.out.tsv 263 RMLST_POST.out.tsv
259 .map { meta, tsv -> [ 'rmlst', tsv] } 264 .map { meta, tsv -> [ 'rmlst', tsv] }
260 .groupTuple(by: [0]) 265 .groupTuple(by: [0])