Mercurial > repos > kkonganti > cfsan_cronology

comparison 0.2.0/modules/custom/dump_software_versions/templates/dumpsoftwareversions.py @ 17:b571995ddb51

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planemo upload
author kkonganti
date Mon, 15 Jul 2024 19:01:29 -0400
parents a5f31c44f8c9
children a72c172df773
comparison
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16:bc5d019d2c3a 17:b571995ddb51
53 versions_this_module["${task.process}"] = { 53 versions_this_module["${task.process}"] = {
54 "python": platform.python_version(), 54 "python": platform.python_version(),
55 "yaml": yaml.__version__, 55 "yaml": yaml.__version__,
56 } 56 }
57 57
58 subprocess.run("cp $versions /galaxy/nf-work-dirs/", shell=True)
59
58 with open("$versions") as f: 60 with open("$versions") as f:
59 versions_by_process = yaml.load(f, Loader=yaml.BaseLoader) 61 versions_by_process = yaml.load(f, Loader=yaml.BaseLoader)
60 versions_by_process.update(versions_this_module) 62 versions_by_process.update(versions_this_module)
61 63
62 # aggregate versions by the module name (derived from fully-qualified process name) 64 # aggregate versions by the module name (derived from fully-qualified process name)