Mercurial > repos > kkonganti > cfsan_cronology

comparison 0.2.0/modules/quast/main.nf @ 16:bc5d019d2c3a

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planemo upload
author kkonganti
date Mon, 15 Jul 2024 18:17:21 -0400
parents a5f31c44f8c9
children a72c172df773
comparison
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15:7c0407ebbdf3 16:bc5d019d2c3a
4 4
5 module (params.enable_module ? "${params.swmodulepath}${params.fs}quast${params.fs}5.2.0" : null) 5 module (params.enable_module ? "${params.swmodulepath}${params.fs}quast${params.fs}5.2.0" : null)
6 conda (params.enable_conda ? "bioconda::quast=5.2.0 conda-forge::libgcc-ng" : null) 6 conda (params.enable_conda ? "bioconda::quast=5.2.0 conda-forge::libgcc-ng" : null)
7 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 7 container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
8 'https://depot.galaxyproject.org/singularity/quast:5.2.0--py39pl5321h2add14b_1' : 8 'https://depot.galaxyproject.org/singularity/quast:5.2.0--py39pl5321h2add14b_1' :
9 'biocontainers/quast:5.2.0--py39pl5321h2add14b_1' }" 9 'quay.io/biocontainers/quast:5.2.0--py39pl5321h2add14b_1' }"
10 10
11 input: 11 input:
12 tuple val(meta) , path(consensus) 12 tuple val(meta) , path(consensus)
13 tuple val(meta2), path(fasta) 13 tuple val(meta2), path(fasta)
14 tuple val(meta3), path(gff) 14 tuple val(meta3), path(gff)