Mercurial > repos > kkonganti > cfsan_cronology

comparison 0.1.0/modules/masurca/polish/main.nf @ 8:d8913a37810a

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"planemo upload"
author kkonganti
date Mon, 27 Nov 2023 20:49:25 -0500
parents c8597e9e1a97
children
comparison
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7:f02f143c02fb 8:d8913a37810a
18 when: 18 when:
19 task.ext.when == null || task.ext.when 19 task.ext.when == null || task.ext.when
20 20
21 script: 21 script:
22 def args = task.ext.args ?: '' 22 def args = task.ext.args ?: ''
23 def memory = task.memory.toGiga() 23 def memory = (task.memory ? task.memory.toGiga() : 16)
24 def mem_per_thread = task.memory.toGiga().toInteger().div(task.cpus.toInteger()).round(0) 24 def mem_per_thread = memory.toGiga().toInteger().div(task.cpus.toInteger()).round(0)
25 def all_reads = "${reads.join(' ')}" 25 def all_reads = "${reads.join(' ')}"
26 prefix = (task.ext.prefix ?: meta.id) 26 prefix = (task.ext.prefix ?: meta.id)
27 """ 27 """
28 polca.sh \\ 28 polca.sh \\
29 -a $contigs \\ 29 -a $contigs \\