Mercurial > repos > kkonganti > cfsan_cronology
comparison 0.1.0/modules/shovill/main.nf @ 8:d8913a37810a
"planemo upload"
| author | kkonganti |
|---|---|
| date | Mon, 27 Nov 2023 20:49:25 -0500 |
| parents | c8597e9e1a97 |
| children |
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| 7:f02f143c02fb | 8:d8913a37810a |
|---|---|
| 22 when: | 22 when: |
| 23 task.ext.when == null || task.ext.when | 23 task.ext.when == null || task.ext.when |
| 24 | 24 |
| 25 script: | 25 script: |
| 26 def args = task.ext.args ?: '' | 26 def args = task.ext.args ?: '' |
| 27 def memory = task.memory.toGiga() | 27 def memory = (task.memory ? task.memory.toGiga() : 16) |
| 28 prefix = (task.ext.prefix ?: meta.id) | 28 prefix = (task.ext.prefix ?: meta.id) |
| 29 """ | 29 """ |
| 30 shovill \\ | 30 shovill \\ |
| 31 --R1 ${reads[0]} \\ | 31 --R1 ${reads[0]} \\ |
| 32 --R2 ${reads[1]} \\ | 32 --R2 ${reads[1]} \\ |