--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.2.0/lib/help/masurcapolca.nf	Mon Jul 15 16:11:44 2024 -0400
@@ -0,0 +1,31 @@
+// Help text for `masurca's polca.sh` within CPIPES.
+
+def masurcapolcaHelp(params) {
+
+    Map tool = [:]
+    Map toolspecs = [:]
+    tool.text = [:]
+    tool.helpparams = [:]
+
+    toolspecs = [
+        'masurcapolca_run': [
+            clihelp: 'Run `polca.sh` from masurca. Default: ' +
+                (params.masurcapolca_run ?: false),
+            cliflag: null,
+            clivalue: null
+        ],
+        'masurcapolca_n': [
+            clihelp: 'Do not polish, just create vcf file, evaluate the assembly and exit. ' +
+                "Default: ${params.masurcapolca_n}",
+            cliflag: '-n',
+            clivalue: (params.masurcapolca_n ? ' ' : '')
+        ]
+    ]
+
+    toolspecs.each {
+        k, v -> tool.text['--' + k] = "${v.clihelp}"
+        tool.helpparams[k] = [ cliflag: "${v.cliflag}", clivalue: v.clivalue ]
+    }
+
+    return tool
+}
\ No newline at end of file