--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.2.0/modules/upload_microreact/main.nf	Mon Jul 15 16:11:44 2024 -0400
@@ -0,0 +1,37 @@
+process UPLOAD_MICROREACT {
+    tag "microreact_post.py"
+    label "process_pico"
+
+    module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
+    conda (params.enable_conda ? "conda-forge::python=3.10 conda-forge::requests" : null)
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://depot.galaxyproject.org/singularity/requests:2.26.0' :
+        'quay.io/biocontainers/requests:2.26.0' }"
+
+    input:
+        path tree
+        path metadata
+
+    output:
+        path "*.txt"       , emit: url
+        path 'versions.yml', emit: versions
+
+    when:
+        task.ext.when == null || task.ext.when
+
+    script:
+        def args = task.ext.args ?: ''
+        """
+        microreact_post.py \\
+            $args \\
+            -atp "${params.microreact_api_key}" \\
+            -name "${params.microreact_tree_name}" \\
+            -dir "."
+
+        cat <<-END_VERSIONS > versions.yml
+        "${task.process}":
+            python: \$( python --version | sed 's/Python //g' )
+        END_VERSIONS
+        """
+
+}
\ No newline at end of file